Nice View of CleanEx Exp : GSE1541_DOC

[General] [References] [Expression data]

General information about the entry
Dataset code GSE1541
Dataset Title A549 parenchymal cell activation
Description Alveolar epithalial cells (A549) were used as a model of pulmonary parenchymal cell activation to quiery gene expression profile of activation with either cyclic stretch (20% elongation), TNF (20 ng/ml), LPS (1 mcg/ml) or TNF+STRETCH at both 1 and 4 hrs..
Organism Homo sapiens
Format Type Intensity
Affymetrix;HG-Focus
Number of Experiments 20
Maximum log 8.45083173871617
Minimum log -5.61419512380609
References
Original URL http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE1541
Paper Reference dos Santos CC et al. Physiol Genomics. 2004 Nov 17;19(3):331-42. Epub 2004 Sep 28.
MEDLINE Reference 15454581
Experiments
Experiment numberExperiment CodeExperiment Description
1GSE1541_GSM26477mRNA from A549 Static Control 1hr Jan 31 2003;src:A549 cells;time=1 h;protocol=control;";
2GSE1541_GSM26478RNA from A549 Cells - Static Control 1hr Replicate 1;src:Alveolar epithelial Cell Line A549;time=1 h;protocol=control;";
3GSE1541_GSM26479A549 RNA Static Control 4hr Jan 31 2003;src:A549 alveolar epithelial cell line;time=4 h;protocol=control;";
4GSE1541_GSM26480RNA A549 cells Static Control 4hr Replicate 1;src:Alveolar epithelial cell line A549;time=4 h;protocol=control;";
5GSE1541_GSM26481A549 LPS 1h Jan 31 2003;src:Alveolar epithelial cells treated with LPS 1 mcg/ml for 1hr;time=1 h;protocol=lipopolysaccharide;";
6GSE1541_GSM26482A549 LPS 1hr Oct 21 2002;src:alveolar epithelial cells;time=1 h;protocol=lipopolysaccharide;";
7GSE1541_GSM26483A549 LPS 4hr Jan 31 2003;src:alveolar epithelial cells RNA;time=4 h;protocol=lipopolysaccharide;";
8GSE1541_GSM26484A549 LPS 4hr Nov 21 2002;src:alveolar epithelial cell line treated with LPS 1mcg/ml for 4 hr - first replicate;time=4 h;protocol=lipopolysaccharide;";
9GSE1541_GSM26485A549 Stretch 1hr Jan 31 2003;src:alveolar epithelial cells exposed to cyclic stretch 20% elongation;time=1 h;protocol=stretch;";
10GSE1541_GSM26486A549 cells Stretch 1hr Oct 20 2002;src:alveolar epithelial cells exposed to cyclic stretch 20% elongation for 1 hr;time=1 h;protocol=stretch;";
11GSE1541_GSM26487A549 Stretch 4hr Nov 21 2002;src:A549 cells exposed to cyclic stretch 20% elongation for a total of 4hrs experiemnt performed on Nov 21 2002;time=4 h;protocol=stretch;";
12GSE1541_GSM26488A549 stretch 4hr Jan 31 2003;src:alveolar epithelial cell line exposed to cyclic stretch 20% elongation for 4hr;time=4 h;protocol=stretch;";
13GSE1541_GSM26489A549 TNF 1hr Jan 31 2003;src:alveolar epithelial cell line exposed to TNF stimulation 20 ng/ml for 1hr;time=1 h;protocol=tumor necrosis factor;";
14GSE1541_GSM26490A549 TNF 1hr Oct 20 2002;src:alveolar epithelial cells exposed to TNF 20 ng/ml for 1hr;time=1 h;protocol=tumor necrosis factor;";
15GSE1541_GSM26491A549 TNF 4hr Jan 31 2003;src:alveolar epithelial cells exposed to TNF 20 ng/ml for 4hrs;time=4 h;protocol=tumor necrosis factor;";
16GSE1541_GSM26492A549 TNF 4hr Nov 21 2002;src:alveolar epithelial cell line exposed to TNF 20 ng/ml for 4hrs;time=4 h;protocol=tumor necrosis factor;";
17GSE1541_GSM26493A549 TNF+Stretch 1hr Jan 31 2003;src:Alveolar epithelial cells exposed to both TNF (20ng/ml) and cyclic stretch (20% elongation) for 1hr;time=1 h;protocol=tumor necrosis factor, stretch;";
18GSE1541_GSM26494A549 TNF+Stretch Oct 20 2002;src:alveolar epithelial cell line exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 1hr;time=1 h;protocol=tumor necrosis factor, stretch;";
19GSE1541_GSM26495A549 TNF+Stretch 4hr Jan 31 2003;src:alveolar epithelial cells exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 4hrs;time=4 h;protocol=tumor necrosis factor, stretch;";
20GSE1541_GSM26496A549 TNF+Stretch 4hr Nov 21 2002;src:alveolar epithelial cells exposed to TNF (20ng/ml) and cyclic stretch (20% elongation) for 4hrs;time=4 h;protocol=tumor necrosis factor, stretch;";