CleanEx Tutorial

Nice View of CleanEx Exp : GSE1379_DOC

Nice View of CleanEx Exp : GSE1379_DOC

[General] [References] [Expression data]

General information about the entry
Dataset code GSE1379
Dataset Title breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Description dataset of 60 patients with ER-positive primary breast cancer and treated with tamoxifen monotherapy for 5 years. Data were generated from whole tissue sections of breast cancers. Sample_keyword: breast cancer, tamoxifen, recurrence.
Organism Homo sapiens
Format Type Dual_channel
Oligoarray;GPL1223
Number of Experiments 60
Maximum log ratio 10.1604685749078
Minimum log ratio -8.74934778748793
Red channel log scale from 5.84549005094438 to 15.9938008283406
Green channel log scale from 5.39231742277876 to 15.994198727809
References
Original URL http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE1379
Paper Reference Ma XJ et al. Cancer Cell. 2004 Jun;5(6):607-16.
MEDLINE Reference 15193263
Experiments
Experiment numberExperiment CodeExperiment Description
1GSE1379_GSM22449whole tissue section from case 25;src:RNA from whole tissue section of case 25 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
2GSE1379_GSM22450whole tissue section from case 59;src:RNA from whole tissue section of case 59 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
3GSE1379_GSM22451whole tissue section from case 68;src:RNA from whole tissue section of case 68 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
4GSE1379_GSM22452whole tissue section from case 140;src:RNA from whole tissue section of case 140 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
5GSE1379_GSM22453whole tissue section from case 180;src:RNA from whole tissue section of case 180 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
6GSE1379_GSM22454whole tissue section from case 260;src:RNA from whole tissue section of case 260 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
7GSE1379_GSM22455whole tissue section from case 280;src:RNA from whole tissue section of case 280 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
8GSE1379_GSM22456whole tissue section from case 289;src:RNA from whole tissue section of case 289 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
9GSE1379_GSM22457whole tissue section from case 295;src:RNA from whole tissue section of case 295 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
10GSE1379_GSM22458whole tissue section from case 297;src:RNA from whole tissue section of case 297 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
11GSE1379_GSM22459whole tissue section from case 317;src:RNA from whole tissue section of case 317 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
12GSE1379_GSM22460whole tissue section from case 319;src:RNA from whole tissue section of case 319 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
13GSE1379_GSM22461whole tissue section from case 342;src:RNA from whole tissue section of case 342 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
14GSE1379_GSM22462whole tissue section from case 356;src:RNA from whole tissue section of case 356 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
15GSE1379_GSM22463whole tissue section from case 374;src:RNA from whole tissue section of case 374 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
16GSE1379_GSM22464whole tissue section from case 420;src:RNA from whole tissue section of case 420 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
17GSE1379_GSM22465whole tissue section from case 469;src:RNA from whole tissue section of case 469 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
18GSE1379_GSM22466whole tissue section from case 518;src:RNA from whole tissue section of case 518 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
19GSE1379_GSM22467whole tissue section from case 547;src:RNA from whole tissue section of case 547 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
20GSE1379_GSM22468whole tissue section from case 605;src:RNA from whole tissue section of case 605 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
21GSE1379_GSM22469whole tissue section from case 607;src:RNA from whole tissue section of case 607 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
22GSE1379_GSM22470whole tissue section from case 633;src:RNA from whole tissue section of case 633 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
23GSE1379_GSM22471whole tissue section from case 638;src:RNA from whole tissue section of case 638 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
24GSE1379_GSM22472whole tissue section from case 648;src:RNA from whole tissue section of case 648 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
25GSE1379_GSM22473whole tissue section from case 651;src:RNA from whole tissue section of case 651 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
26GSE1379_GSM22474whole tissue section from case 655;src:RNA from whole tissue section of case 655 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
27GSE1379_GSM22475whole tissue section from case 662;src:RNA from whole tissue section of case 662 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
28GSE1379_GSM22476whole tissue section from case 687;src:RNA from whole tissue section of case 687 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
29GSE1379_GSM22477whole tissue section from case 749;src:RNA from whole tissue section of case 749 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
30GSE1379_GSM22478whole tissue section from case 763;src:RNA from whole tissue section of case 763 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
31GSE1379_GSM22479whole tissue section from case 772;src:RNA from whole tissue section of case 772 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
32GSE1379_GSM22480whole tissue section from case 823;src:RNA from whole tissue section of case 823 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
33GSE1379_GSM22481whole tissue section from case 829;src:RNA from whole tissue section of case 829 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
34GSE1379_GSM22482whole tissue section from case 843;src:RNA from whole tissue section of case 843 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
35GSE1379_GSM22483whole tissue section from case 849;src:RNA from whole tissue section of case 849 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
36GSE1379_GSM22484whole tissue section from case 856;src:RNA from whole tissue section of case 856 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
37GSE1379_GSM22485whole tissue section from case 868;src:RNA from whole tissue section of case 868 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
38GSE1379_GSM22486whole tissue section from case 871;src:RNA from whole tissue section of case 871 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
39GSE1379_GSM22487whole tissue section from case 878;src:RNA from whole tissue section of case 878 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
40GSE1379_GSM22488whole tissue section from case 1037;src:RNA from whole tissue section of case 1037 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
41GSE1379_GSM22489whole tissue section from case 1045;src:RNA from whole tissue section of case 1045 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
42GSE1379_GSM22490whole tissue section from case 1047;src:RNA from whole tissue section of case 1047 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
43GSE1379_GSM22491whole tissue section from case 1085;src:RNA from whole tissue section of case 1085 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
44GSE1379_GSM22492whole tissue section from case 1093;src:RNA from whole tissue section of case 1093 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
45GSE1379_GSM22493whole tissue section from case 1125;src:RNA from whole tissue section of case 1125 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
46GSE1379_GSM22494whole tissue section from case 1205;src:RNA from whole tissue section of case 1205 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
47GSE1379_GSM22495whole tissue section from case 1206;src:RNA from whole tissue section of case 1206 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
48GSE1379_GSM22496whole tissue section from case 1218;src:RNA from whole tissue section of case 1218 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
49GSE1379_GSM22497whole tissue section from case 1260;src:RNA from whole tissue section of case 1260 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
50GSE1379_GSM22498whole tissue section from case 1279;src:RNA from whole tissue section of case 1279 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
51GSE1379_GSM22499whole tissue section from case 1304;src:RNA from whole tissue section of case 1304 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
52GSE1379_GSM22500whole tissue section from case 1343;src:RNA from whole tissue section of case 1343 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=cancer recurred;";
53GSE1379_GSM22501whole tissue section from case 1363;src:RNA from whole tissue section of case 1363 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
54GSE1379_GSM22502whole tissue section from case 1368;src:RNA from whole tissue section of case 1368 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
55GSE1379_GSM22503whole tissue section from case 1370;src:RNA from whole tissue section of case 1370 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
56GSE1379_GSM22504whole tissue section from case 1389;src:RNA from whole tissue section of case 1389 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
57GSE1379_GSM22505whole tissue section from case 1405;src:RNA from whole tissue section of case 1405 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
58GSE1379_GSM22506whole tissue section from case 1419;src:RNA from whole tissue section of case 1419 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
59GSE1379_GSM22507whole tissue section from case 1437;src:RNA from whole tissue section of case 1437 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
60GSE1379_GSM22508whole tissue section from case 1507;src:RNA from whole tissue section of case 1507 labeled with Cy5;src:human universal reference RNA (Stratagene) labeled with Cy3;disease state=disease-free;";
Last update March 2014