Nice View of CleanEx Exp : GSE1098_DOC

[General] [References] [Expression data]

General information about the entry

Dataset code	GSE1098
Dataset Title	Effect of LPS and LPS-binding protein treatment on RAW 264.4 cells
Description	All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for either 1, 2, 4, 8, 16 or 48 hours. Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for either 1, 2, 4, 8, 16 or 48 hours. This SuperSeries is composed of the following subset Series: GSE1099: Effect of LPS and LPS-binding protein treatment for 1 hour on RAW 264.4 cells GSE1100: Effect of LPS and LPS-binding protein treatment for 2 hours on RAW 264.4 cells GSE1101: Effect of LPS and LPS-binding protein treatment for 4 hours on RAW 264.4 cells GSE1102: Effect of LPS and LPS-binding protein treatment for 8 hours on RAW 264.4 cells GSE1103: Effect of LPS and LPS-binding protein treatment for 16 hours on RAW 264.4 cells GSE1104: Effect of LPS and LPS-binding protein treatment for 48 hours on RAW 264.4 cells.
Organism	Mus musculus
Format Type	Dual_channel Oligoarray;GPL254
Number of Experiments	36
Maximum log ratio	9.99542233640865
Minimum log ratio	-8.03979823173932
Red channel log scale	from 2.61900679191342 to 17.0947684266783
Green channel log scale	from 3.53337645851403 to 17.1877580060608

References

Original URL	http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE1098
Paper Reference	Zhu X et al. J Immunol. 2006 Oct 1;177(7):4299-310.
MEDLINE Reference	16982864

Experiments

Experiment number	Experiment Code	Experiment Description
1	GSE1098_GSM18191	Untreated RAW 264.7 cells 1 hour vs LPS and LPS-binding protein treated RAW 264.7 cells 1 hour (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 1 hour.";
2	GSE1098_GSM18192	Untreated RAW 264.7 cells 1 hour vs LPS and LPS-binding protein treated RAW 264.7 cells 1 hour (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 1 hour.";
3	GSE1098_GSM18193	Untreated RAW 264.7 cells 1 hour vs LPS and LPS-binding protein treated RAW 264.7 cells 1 hour (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 1 hour.";
4	GSE1098_GSM18194	Untreated RAW 264.7 cells 2 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 2 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 2 hours.";
5	GSE1098_GSM18195	Untreated RAW 264.7 cells 2 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 2 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 2 hours.";
6	GSE1098_GSM18196	Untreated RAW 264.7 cells 2 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 2 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 2 hours.";
7	GSE1098_GSM18197	Untreated RAW 264.7 cells 4 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 4 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 4 hours.";
8	GSE1098_GSM18198	Untreated RAW 264.7 cells 4 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 4 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 4 hours.";
9	GSE1098_GSM18199	Untreated RAW 264.7 cells 4 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 4 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 4 hours.";
10	GSE1098_GSM18200	Untreated RAW 264.7 cells 8 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 8 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 8 hours.";
11	GSE1098_GSM18201	Untreated RAW 264.7 cells 8 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 8 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 8 hours.";
12	GSE1098_GSM18202	Untreated RAW 264.7 cells 8 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 8 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 8 hours.";
13	GSE1098_GSM18203	Untreated RAW 264.7 cells 16 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 16 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 16 hours.";
14	GSE1098_GSM18204	Untreated RAW 264.7 cells 16 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 16 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 16 hours.";
15	GSE1098_GSM18205	Untreated RAW 264.7 cells 16 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 16 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 16 hours.";
16	GSE1098_GSM18206	Untreated RAW 264.7 cells 48 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 48 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 48 hours.";
17	GSE1098_GSM18207	Untreated RAW 264.7 cells 48 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 48 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 48 hours.";
18	GSE1098_GSM18208	Untreated RAW 264.7 cells 48 hours vs LPS and LPS-binding protein treated RAW 264.7 cells 48 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from untreated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.4 cells cultured for 48 hours.";
19	GSE1098_GSM18209	LPS and LPS-binding protein treated RAW 264.7 cells 1 hour vs Untreated RAW 264.7 cells 1 hour (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 1 hour.";
20	GSE1098_GSM18210	LPS and LPS-binding protein treated RAW 264.7 cells 1 hour vs Untreated RAW 264.7 cells 1 hour (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 1 hour.";
21	GSE1098_GSM18211	LPS and LPS-binding protein treated RAW 264.7 cells 1 hour vs Untreated RAW 264.7 cells 1 hour (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 1 hour.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 1 hour.";
22	GSE1098_GSM18212	LPS and LPS-binding protein treated RAW 264.7 cells 2 hours vs Untreated RAW 264.7 cells 2 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 2 hours.";
23	GSE1098_GSM18213	LPS and LPS-binding protein treated RAW 264.7 cells 2 hours vs Untreated RAW 264.7 cells 2 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 2 hours.";
24	GSE1098_GSM18214	LPS and LPS-binding protein treated RAW 264.7 cells 2 hours vs Untreated RAW 264.7 cells 2 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 2 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 2 hours.";
25	GSE1098_GSM18215	LPS and LPS-binding protein treated RAW 264.7 cells 4 hours vs Untreated RAW 264.7 cells 4 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 4 hours.";
26	GSE1098_GSM18216	LPS and LPS-binding protein treated RAW 264.7 cells 4 hours vs Untreated RAW 264.7 cells 4 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 4 hours.";
27	GSE1098_GSM18217	LPS and LPS-binding protein treated RAW 264.7 cells 4 hours vs Untreated RAW 264.7 cells 4 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 4 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 4 hours.";
28	GSE1098_GSM18218	LPS and LPS-binding protein treated RAW 264.7 cells 8 hours vs Untreated RAW 264.7 cells 8 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 8 hours.";
29	GSE1098_GSM18219	LPS and LPS-binding protein treated RAW 264.7 cells 8 hours vs Untreated RAW 264.7 cells 8 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 8 hours.";
30	GSE1098_GSM18220	LPS and LPS-binding protein treated RAW 264.7 cells 8 hours vs Untreated RAW 264.7 cells 8 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 8 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 8 hours.";
31	GSE1098_GSM18221	LPS and LPS-binding protein treated RAW 264.7 cells 16 hours vs Untreated RAW 264.7 cells 16 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 16 hours.";
32	GSE1098_GSM18222	LPS and LPS-binding protein treated RAW 264.7 cells 16 hours vs Untreated RAW 264.7 cells 16 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 16 hours.";
33	GSE1098_GSM18223	LPS and LPS-binding protein treated RAW 264.7 cells 16 hours vs Untreated RAW 264.7 cells 16 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 16 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 16 hours.";
34	GSE1098_GSM18224	LPS and LPS-binding protein treated RAW 264.7 cells 48 hours vs Untreated RAW 264.7 cells 48 hours (set 1);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 48 hours.";
35	GSE1098_GSM18225	LPS and LPS-binding protein treated RAW 264.7 cells 48 hours vs Untreated RAW 264.7 cells 48 hours (set 2);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 48 hours.";
36	GSE1098_GSM18226	LPS and LPS-binding protein treated RAW 264.7 cells 48 hours vs Untreated RAW 264.7 cells 48 hours (set 3);All samples were gathered from mouse RAW 264.7 cells (macrophages). Control total RNA was extracted from lipopolysaccharide (100ng/ml) and lipopolysaccharide-binding protein (100pM) treated RAW 264.7 cells cultured for 48 hours.;All samples were gathered from mouse RAW 264.7 cells (macrophages). Test total RNA was extracted from untreated RAW 264.4 cells cultured for 48 hours.";