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Nice View of CleanEx : HS_VTCN1

Nice View of CleanEx: HS_VTCN1

This viewer shows only the top ten expression datasets of each type linked to HS_VTCN1

To see the full entry, go to HS_VTCN1 full view

[General] [RNA sequences] [Cross-references] [Affymetrix data] [COUNTS data] [Dual Channel data] [Other datasets]



 

General information about the entry
Entry name  HS_VTCN1
Locus  1p13.1
Description of the gene  V-set domain containing T cell activation inhibitor 1.
Cross-references
Entrez GeneID  79679
Genomic contig  AC_000044. Position of TSS : 115982182 on minus strand (based on ANNOTATION)
 AC_000133. Position of TSS : 115611572 on minus strand (based on ANNOTATION)
 NC_000001. Position of TSS : 117555071 on minus strand (based on ANNOTATION)
 NT_019273. Position of TSS : 13661233 on minus strand (based on ANNOTATION)
 NW_001838594. Position of TSS : 8860878 on minus strand (based on ANNOTATION)
 NW_922462. Position of TSS : 8700393 on minus strand (based on ANNOTATION)
Unigene  Hs.546434
MIM  608162
Genew  HGNC:28873; VTCN1
GeneCards  VTCN1
Ensembl  VTCN1
RefSeq
 NM_024626 
SWISSPROT
 Q7Z7D3(VTCN1_HUMAN) 
EPD
Affymetrix Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_VTCN1
GSE2109  870  54675  Expression Project for Oncology (expO)  
GSE7307  677  54675  Human body index - transcriptional profiling  
GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012
GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694
GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...  
GSE2034  286  22283  Breast cancer relapse free survival  15721472
GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321
GSE7390  198  22283  Strong Time Dependence of the 76-Gene Prognostic Signature  17545524
GSE2990  189  22283  Gene Expression Profiling in Breast Cancer: Understanding the...  16478745
COUNTS (SAGE or MPSS) Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_VTCN1
GSE14  210  603158  CGAP SAGE  11257097
GSE1747  32  320452  Human 32 MPSS samples  
GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)  
HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440
GSE694  8  92782  SADE analysis of microdissected kidney  14595018
GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891
GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073
GSE2056  3  29318  PBECs stimulated with pro-inflammatory cytokines and P....  15701729
GSE278  3  14807  Pancreas and islet gene expression  
Dual Channel Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_VTCN1
R0002  295  24469  Survival in breast cancer.  12490681
GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798
GSE3165A  188  28195  Identification of conserved gene expression features across...  
GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109
GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655
GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416
GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800
GSE2741  164  28195  Breast Tumor's study  16230372
GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...  
Other Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_VTCN1
GSE2845  311  24479  Human breast tumor  
GSE2143  51  14443  Human coronary artery study  15942018
GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...  
GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186
GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692
GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594
GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...  
GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...  
GSE2182  12  8155  Drug treatment comparison  
RNA sequences according to Unigene available on : June 11 2008
EMBL AK225413.1; AK225413. [EMBL / GenBank / DDBJ]
AY280972.1; AY280972. [EMBL / GenBank / DDBJ]
AY346100.1; AY346100. [EMBL / GenBank / DDBJ]
AY358352.1; AY358352. [EMBL / GenBank / DDBJ]
AY442303.1; AY442303. [EMBL / GenBank / DDBJ]
BC065717.1; BC065717. [EMBL / GenBank / DDBJ]
BC074729.2; BC074729. [EMBL / GenBank / DDBJ]
BX648021.1; BX648021. [EMBL / GenBank / DDBJ]
DQ103757.1; DQ103757. [EMBL / GenBank / DDBJ]
DQ836392.1; DQ836392. [EMBL / GenBank / DDBJ]
Last update March 2014