Nice View of CleanEx: HS_UPF3B

General information about the entry

Entry name  HS_UPF3B Locus  Xq25-q26 Description of the gene  UPF3 regulator of nonsense transcripts homolog B (yeast).

Cross-references

Entrez GeneID  65109 Genomic contig  AC_000066. Position of TSS : 119441611 on minus strand (based on ANNOTATION)  AC_000155. Position of TSS : 108461263 on plus strand (based on ANNOTATION)  NC_000023. Position of TSS : 118870995 on minus strand (based on ANNOTATION)  NT_011786. Position of TSS : 3254677 on minus strand (based on ANNOTATION)  NW_001842395. Position of TSS : 190696 on plus strand (based on ANNOTATION)  NW_927720. Position of TSS : 3252953 on minus strand (based on ANNOTATION) Unigene  Hs.103832 MIM  300298 Genew  HGNC:20439; UPF3B GeneCards  UPF3B Ensembl  UPF3B RefSeq  NM_023010   NM_080632  SWISSPROT  Q9BZI7(REN3B_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_UPF3B GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_UPF3B GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_UPF3B R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_UPF3B GSE2845  311  24479  Human breast tumor   GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE2052  26  9943  IPF versus Control  16128620 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE1511  6  19282  Gene expression profile of CD56dimCD16+, CD56brightCD16- and...  15557145

RNA sequences according to Unigene available on : June 11 2008

EMBL AF318576.1; AF318576. [EMBL / GenBank / DDBJ] AK093728.1; AK093728. [EMBL / GenBank / DDBJ] AY013251.1; AY013251. [EMBL / GenBank / DDBJ] BC121017.1; BC121017. [EMBL / GenBank / DDBJ] BC121018.1; BC121018. [EMBL / GenBank / DDBJ]