Nice View of CleanEx: HS_TMEM20

General information about the entry

Entry name  HS_TMEM20 Locus  10q23.33 Description of the gene  Transmembrane protein 20.

Cross-references

Entrez GeneID  159371 Genomic contig  AC_000053. Position of TSS : 89393871 on plus strand (based on ANNOTATION)  AC_000142. Position of TSS : 89289216 on minus strand (based on ANNOTATION)  NC_000010. Position of TSS : 95643719 on plus strand (based on ANNOTATION)  NT_030059. Position of TSS : 14402255 on plus strand (based on ANNOTATION)  NW_001838005. Position of TSS : 4839363 on minus strand (based on ANNOTATION)  NW_924884. Position of TSS : 6396688 on plus strand (based on ANNOTATION) Unigene  Hs.632085 Genew  HGNC:26607; TMEM20 GeneCards  TMEM20 Ensembl  TMEM20 RefSeq  NM_001134658   NM_153226  SWISSPROT  Q2M3R5(TMM20_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TMEM20 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TMEM20 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791 GSE2056  3  29318  PBECs stimulated with pro-inflammatory cytokines and P....  15701729

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TMEM20 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501 GSE3901  120  45982  Response of quiescent human fibroblasts to different growth...   GSE2003  64  9705  NCI cDNA microarray-human 60 cell lines  10700174

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TMEM20 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2053  8  15075  RAvs.ND   GSE1510  5  34030  Human UniGene Set RZPD 1 - Zipf's Normalization   GSE1133B  158  11391  tissue-specific pattern of mRNA expression  15075390

RNA sequences according to Unigene available on : June 11 2008

EMBL AK091309.1; AK091309. [EMBL / GenBank / DDBJ] AK123062.1; AK123062. [EMBL / GenBank / DDBJ] AK123734.1; AK123734. [EMBL / GenBank / DDBJ] BC036382.1; BC036382. [EMBL / GenBank / DDBJ] BC041432.1; BC041432. [EMBL / GenBank / DDBJ] BC047102.1; BC047102. [EMBL / GenBank / DDBJ] BC058549.1; BC058549. [EMBL / GenBank / DDBJ] BC104814.1; BC104814. [EMBL / GenBank / DDBJ]