Nice View of CleanEx: HS_TBX4

General information about the entry

Entry name  HS_TBX4 Locus  17q21-q22 Description of the gene  T-box 4.

Cross-references

Entrez GeneID  9496 Genomic contig  AC_000060. Position of TSS : 58634840 on plus strand (based on ANNOTATION)  AC_000149. Position of TSS : 54928130 on minus strand (based on ANNOTATION)  NC_000017. Position of TSS : 56888588 on plus strand (based on ANNOTATION)  NG_008080. Position of TSS : 5000 on plus strand (based on ANNOTATION)  NT_010783. Position of TSS : 18186867 on plus strand (based on ANNOTATION)  NW_001838450. Position of TSS : 3376070 on minus strand (based on ANNOTATION)  NW_926907. Position of TSS : 1246070 on plus strand (based on ANNOTATION) Unigene  Hs.143907 MIM  601719 Genew  HGNC:11603; TBX4 GeneCards  TBX4 Ensembl  TBX4 RefSeq  NM_018488  SWISSPROT  P57082(TBX4_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TBX4 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TBX4 GSE14  210  603158  CGAP SAGE  11257097 GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791 GSE505  2  8980  Serial analysis of gene expression in the corneal endothelium...  12556388

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TBX4 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_TBX4 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217

RNA sequences according to Unigene available on : June 11 2008

EMBL AF188703.1; AF188703. [EMBL / GenBank / DDBJ] BC136403.1; BC136403. [EMBL / GenBank / DDBJ] BC142620.1; BC142620. [EMBL / GenBank / DDBJ]