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Nice View of CleanEx : HS_SYNGAP1

Nice View of CleanEx: HS_SYNGAP1

This viewer shows only the top ten expression datasets of each type linked to HS_SYNGAP1

To see the full entry, go to HS_SYNGAP1 full view

[General] [RNA sequences] [Cross-references] [Affymetrix data] [COUNTS data] [Dual Channel data] [Other datasets]



 

General information about the entry
Entry name  HS_SYNGAP1
Locus  6p21.3
Description of the gene  Synaptic Ras GTPase activating protein 1 homolog (rat).
Old gene names  "synaptic Ras GTPase activating protein 1 (homolog of rat)"
Cross-references
Entrez GeneID  8831
Genomic contig  AC_000049. Position of TSS : 34942269 on plus strand (based on ANNOTATION)
 AC_000138. Position of TSS : 33128147 on plus strand (based on ANNOTATION)
 NC_000006. Position of TSS : 33495824 on plus strand (based on ANNOTATION)
 NT_007592. Position of TSS : 24246096 on plus strand (based on ANNOTATION)
 NW_001838980. Position of TSS : 6400456 on plus strand (based on ANNOTATION)
 NW_923073. Position of TSS : 6406590 on plus strand (based on ANNOTATION)
Unigene  Hs.586264
MIM  603384
Genew  HGNC:11497; SYNGAP1
GeneCards  SYNGAP1
Ensembl  SYNGAP1
RefSeq
 NM_006772 
SWISSPROT
 Q96PV0(SYGP1_HUMAN) 
EPD
Affymetrix Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_SYNGAP1
GSE2109  870  54675  Expression Project for Oncology (expO)  
GSE7307  677  54675  Human body index - transcriptional profiling  
GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012
GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...  
GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321
GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042
GSE3141  111  54675  Lung Cancer Dataset  16273092
GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB  
GSE1145B  90  54675  changes in cardiac transcription profiles brought about by...  
COUNTS (SAGE or MPSS) Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_SYNGAP1
GSE14  210  603158  CGAP SAGE  11257097
GSE1747  32  320452  Human 32 MPSS samples  
GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)  
HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440
GSE694  8  92782  SADE analysis of microdissected kidney  14595018
GSE31  5  23628  SAGE_HumanEpidermis  11772949
GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891
GSE10  4  96903  eye-SAGE  11756676
GSE41  4  36402  Effects of estrogen  11085516
Dual Channel Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_SYNGAP1
GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798
GSE3165A  188  28195  Identification of conserved gene expression features across...  
GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655
GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416
GSE2741  164  28195  Breast Tumor's study  16230372
GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...  
GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501
GSE3178  48  20024  Gene expression patterns associated with p53 status in breast...  17150101
GSE3521  34  23244  Analysis of breast tumors and metastases identify a molecular...  
Other Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_SYNGAP1
GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...  
GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...  
GSE1133B  158  11391  tissue-specific pattern of mRNA expression  15075390
RNA sequences according to Unigene available on : June 11 2008
EMBL AK094225.1; AK094225. [EMBL / GenBank / DDBJ]
AK124666.1; AK124666. [EMBL / GenBank / DDBJ]
AL713634.1; AL713634. [EMBL / GenBank / DDBJ]
Last update March 2014