Nice View of CleanEx: HS_SMAD9

General information about the entry

Entry name  HS_SMAD9 Locus  13q12-q14 Description of the gene  SMAD family member 9. Old gene names  "MAD, mothers against decapentaplegic homolog 9 (Drosophila)", "SMAD, mothers against DPP homolog 9 (Drosophila)"

Cross-references

Entrez GeneID  4093 Genomic contig  AC_000056. Position of TSS : 18521251 on minus strand (based on ANNOTATION)  AC_000145. Position of TSS : 18233770 on plus strand (based on ANNOTATION)  NC_000013. Position of TSS : 36351965 on minus strand (based on ANNOTATION)  NT_024524. Position of TSS : 18433965 on minus strand (based on ANNOTATION)  NW_001838073. Position of TSS : 8531590 on plus strand (based on ANNOTATION)  NW_925473. Position of TSS : 18256475 on minus strand (based on ANNOTATION) Unigene  Hs.123119 MIM  603295 Genew  HGNC:6774; SMAD9 GeneCards  SMAD9 Ensembl  SMAD9 RefSeq  NM_001127217   NM_005905  SWISSPROT  O15198(SMAD9_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SMAD9 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SMAD9 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SMAD9 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SMAD9 GSE2845  311  24479  Human breast tumor   GSE1440  140  9131  TIAR represses c-Myc biosynthesis following ultraviolet light...   GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE1433  12  9215  TIAR represses c-Myc biosynthesis following ultraviolet light...  16537914 GSE1361  9  9131  Concurrent Versus Individual Binding of HuR and AUF1 to Common...  15257295

RNA sequences according to Unigene available on : June 11 2008

EMBL BC011559.1; BC011559. [EMBL / GenBank / DDBJ] BC067766.1; BC067766. [EMBL / GenBank / DDBJ] BC104760.1; BC104760. [EMBL / GenBank / DDBJ] BC104762.1; BC104762. [EMBL / GenBank / DDBJ] D83760.1; D83760. [EMBL / GenBank / DDBJ] D83761.1; D83761. [EMBL / GenBank / DDBJ]