Nice View of CleanEx: HS_SAMD4B

General information about the entry

Entry name  HS_SAMD4B Locus  19q13.2 Description of the gene  Sterile alpha motif domain containing 4B.

Cross-references

Entrez GeneID  55095 Genomic contig  AC_000062. Position of TSS : 36634787 on plus strand (based on ANNOTATION)  AC_000151. Position of TSS : 36279806 on plus strand (based on ANNOTATION)  NC_000019. Position of TSS : 44524947 on plus strand (based on ANNOTATION)  NT_011109. Position of TSS : 12101325 on plus strand (based on ANNOTATION)  NW_001838496. Position of TSS : 2046180 on plus strand (based on ANNOTATION)  NW_927217. Position of TSS : 2041558 on plus strand (based on ANNOTATION) Unigene  Hs.612332 Genew  HGNC:25492; SAMD4B GeneCards  SAMD4B Ensembl  SAMD4B RefSeq  NM_018028  SWISSPROT  Q5PRF9(SAM4B_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD4B GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD4B GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD4B R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD4B GSE2845  311  24479  Human breast tumor   GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE2097  22  17567  Epigenetic treatment of cervical carcinoma cell lines  16434596 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE2053  8  15075  RAvs.ND   GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217

RNA sequences according to Unigene available on : June 11 2008

EMBL AK091041.1; AK091041. [EMBL / GenBank / DDBJ] AK091238.1; AK091238. [EMBL / GenBank / DDBJ] AK128884.1; AK128884. [EMBL / GenBank / DDBJ] BC039652.1; BC039652. [EMBL / GenBank / DDBJ] BC054518.1; BC054518. [EMBL / GenBank / DDBJ] BC065211.1; BC065211. [EMBL / GenBank / DDBJ] BC080641.1; BC080641. [EMBL / GenBank / DDBJ] EF601121.1; EF601121. [EMBL / GenBank / DDBJ]