Nice View of CleanEx: HS_SAMD1

General information about the entry

Entry name  HS_SAMD1 Locus  19p13.12 Description of the gene  Sterile alpha motif domain containing 1.

Cross-references

Entrez GeneID  90378 Genomic contig  AC_000062. Position of TSS : 14094546 on minus strand (based on ANNOTATION)  AC_000151. Position of TSS : 13770885 on plus strand (based on ANNOTATION)  NC_000019. Position of TSS : 14062231 on minus strand (based on ANNOTATION)  NT_011295. Position of TSS : 5464033 on minus strand (based on ANNOTATION)  NW_001838483. Position of TSS : 503206 on plus strand (based on ANNOTATION)  NW_927195. Position of TSS : 5310792 on minus strand (based on ANNOTATION) Unigene  Hs.140309 Genew  HGNC:17958; SAMD1 GeneCards  SAMD1 Ensembl  SAMD1 RefSeq  NM_138352  SWISSPROT  Q6SPF0(SAMD1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919C  164  12646  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD1 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD1 GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE60  133  18613  Diffuse large B-cell lymphoma  10676951 GSE4268  125  44748  Breast and ovarian carcinoma  12960427 GSE2193  123  47017  Normal_human_tissues  15774023 GSE4335  122  46999  Norway/Stanford Breast Tumors  12829800 GSE3901  120  45982  Response of quiescent human fibroblasts to different growth...   GSE425  119  43996  Acute myeloid leukemia study  15084693

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_SAMD1 GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE2097  22  17567  Epigenetic treatment of cervical carcinoma cell lines  16434596 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2053  8  15075  RAvs.ND   GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217 GSE1510  5  34030  Human UniGene Set RZPD 1 - Zipf's Normalization

RNA sequences according to Unigene available on : June 11 2008

EMBL AY453840.1; AY453840. [EMBL / GenBank / DDBJ] BC007384.2; BC007384. [EMBL / GenBank / DDBJ] BC030129.2; BC030129. [EMBL / GenBank / DDBJ] BC065477.1; BC065477. [EMBL / GenBank / DDBJ] BC080588.1; BC080588. [EMBL / GenBank / DDBJ]