Nice View of CleanEx: HS_RBM20

General information about the entry

Entry name  HS_RBM20 Locus  10q25.2 Description of the gene  RNA binding motif protein 20.

Cross-references

Entrez GeneID  282996 Genomic contig  AC_000053. Position of TSS : 106265672 on plus strand (based on ANNOTATION)  AC_000142. Position of TSS : 106235665 on minus strand (based on ANNOTATION)  NC_000010. Position of TSS : 112394202 on plus strand (based on ANNOTATION)  NT_030059. Position of TSS : 31152738 on plus strand (based on ANNOTATION)  NW_001838006. Position of TSS : 12468768 on minus strand (based on ANNOTATION)  NW_924884. Position of TSS : 23268489 on plus strand (based on ANNOTATION) Unigene  Hs.715766 Genew  HGNC:27424; RBM20 GeneCards  RBM20 Ensembl  RBM20 RefSeq  NM_001134363  SWISSPROT  Q5T481(RBM20_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_RBM20 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919C  164  12646  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_RBM20 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_RBM20 R0002  295  24469  Survival in breast cancer.  12490681 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE4268  125  44748  Breast and ovarian carcinoma  12960427 GSE2193  123  47017  Normal_human_tissues  15774023 GSE4335  122  46999  Norway/Stanford Breast Tumors  12829800 GSE3901  120  45982  Response of quiescent human fibroblasts to different growth...   GSE425  119  43996  Acute myeloid leukemia study  15084693 GSE3933  112  45834  Prostate Cancer  14711987 GSE1037  91  40367  Lung cancer

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_RBM20 GSE2845  311  24479  Human breast tumor   GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217 GSE1510  5  34030  Human UniGene Set RZPD 1 - Zipf's Normalization   GSE1133B  158  11391  tissue-specific pattern of mRNA expression  15075390

RNA sequences according to Unigene available on : June 11 2008

EMBL AK302802.1; AK302802. [EMBL / GenBank / DDBJ] BX648563.1; BX648563. [EMBL / GenBank / DDBJ] EU822950.1; EU822950. [EMBL / GenBank / DDBJ]