Nice View of CleanEx: HS_PYDC1

General information about the entry

Entry name  HS_PYDC1 Locus  16p11.2 Description of the gene  PYD (pyrin domain) containing 1. Old gene names  "pyrin domain containing 1"

Cross-references

Entrez GeneID  260434 Genomic contig  AC_000059. Position of TSS : 29069629 on plus strand (based on ANNOTATION)  AC_000148. Position of TSS : 28790026 on minus strand (based on ANNOTATION)  NC_000016. Position of TSS : 31135898 on minus strand (based on ANNOTATION)  NT_010393. Position of TSS : 22541476 on minus strand (based on ANNOTATION)  NW_001838236. Position of TSS : 908228 on minus strand (based on ANNOTATION)  NW_926306. Position of TSS : 722999 on plus strand (based on ANNOTATION) Unigene  Hs.58314 Genew  HGNC:30261; PYDC1 GeneCards  PYDC1 Ensembl  PYDC1 RefSeq  NM_152901  SWISSPROT  Q8WXC3(PYDC1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PYDC1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PYDC1 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE10  4  96903  eye-SAGE  11756676 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791 GSE2056  3  29318  PBECs stimulated with pro-inflammatory cytokines and P....  15701729 GSE507  3  7700  Novel estrogen and tamoxifen induced genes  11850811

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PYDC1 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE4268  125  44748  Breast and ovarian carcinoma  12960427 GSE2193  123  47017  Normal_human_tissues  15774023

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PYDC1 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE2097  22  17567  Epigenetic treatment of cervical carcinoma cell lines  16434596 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217

RNA sequences according to Unigene available on : June 11 2008

EMBL AF086332.1; AF086332. [EMBL / GenBank / DDBJ] AF454669.1; AF454669. [EMBL / GenBank / DDBJ] AF467809.1; AF467809. [EMBL / GenBank / DDBJ] AY163727.1; AY163727. [EMBL / GenBank / DDBJ] BC105033.1; BC105033. [EMBL / GenBank / DDBJ] BC105035.1; BC105035. [EMBL / GenBank / DDBJ]