Nice View of CleanEx: HS_PGAM5

General information about the entry

Entry name  HS_PGAM5 Locus  12q24.33 Description of the gene  Phosphoglycerate mutase family member 5.

Cross-references

Entrez GeneID  192111 Genomic contig  AC_000055. Position of TSS : 132986757 on plus strand (based on ANNOTATION)  AC_000144. Position of TSS : 130078591 on minus strand (based on ANNOTATION)  NC_000012. Position of TSS : 131797508 on plus strand (based on ANNOTATION)  NT_024477. Position of TSS : 480443 on plus strand (based on ANNOTATION)  NW_001838067. Position of TSS : 32945 on minus strand (based on ANNOTATION)  NW_925428. Position of TSS : 438861 on plus strand (based on ANNOTATION) Unigene  Hs.102558 Genew  HGNC:28763; PGAM5 GeneCards  PGAM5 Ensembl  PGAM5 RefSeq  NM_138575  SWISSPROT  Q96HS1(PGAM5_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PGAM5 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1145B  90  54675  changes in cardiac transcription profiles brought about by...   GSE6532C  87  54675  Definition of clinically distinct molecular subtypes in...  17401012 GSE9195  77  54675  Predicting prognosis using molecular profiling in estrogen...  18498629 GSE3744  47  54675  Human breast tumor expression  16473279 GSE2125  45  54675  isolated alveolar macrophages  16166618 GSE1643  40  54675  Normal Variance of Gene Expression in the Human Lung  16498083

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PGAM5 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PGAM5 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PGAM5 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE1440  140  9131  TIAR represses c-Myc biosynthesis following ultraviolet light...   GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE1433  12  9215  TIAR represses c-Myc biosynthesis following ultraviolet light...  16537914

RNA sequences according to Unigene available on : June 11 2008

EMBL AF357523.1; AF357523. [EMBL / GenBank / DDBJ] AK097688.1; AK097688. [EMBL / GenBank / DDBJ] AK301831.1; AK301831. [EMBL / GenBank / DDBJ] BC008196.1; BC008196. [EMBL / GenBank / DDBJ] BC047906.2; BC047906. [EMBL / GenBank / DDBJ] EU249757.1; EU249757. [EMBL / GenBank / DDBJ]