Nice View of CleanEx : HS_PDX1

Nice View of CleanEx: HS_PDX1

This viewer shows only the top ten expression datasets of each type linked to HS_PDX1

To see the full entry, go to HS_PDX1 full view

[General] [RNA sequences] [Cross-references] [Affymetrix data] [COUNTS data] [Dual Channel data] [Other datasets]



 

General information about the entry
Entry name  HS_PDX1
Locus  13q12.1
Description of the gene  Pancreatic and duodenal homeobox 1.
Old gene names  "insulin promoter factor 1, homeodomain transcription factor"
Cross-references
Entrez GeneID  3651
Genomic contig  AC_000056. Position of TSS : 9568867 on plus strand (based on ANNOTATION)
 AC_000145. Position of TSS : 9319479 on minus strand (based on ANNOTATION)
 NC_000013. Position of TSS : 27392156 on plus strand (based on ANNOTATION)
 NG_008183. Position of TSS : 5000 on plus strand (based on ANNOTATION)
 NT_024524. Position of TSS : 9474156 on plus strand (based on ANNOTATION)
 NW_001838071. Position of TSS : 2917006 on minus strand (based on ANNOTATION)
 NW_925473. Position of TSS : 9304091 on plus strand (based on ANNOTATION)
Unigene  Hs.32938
MIM  600733
Genew  HGNC:6107; PDX1
GeneCards  PDX1
Ensembl  PDX1
RefSeq
 NM_000209 
SWISSPROT
 O00330(ODPX_HUMAN)   P52945(PDX1_HUMAN) 
EPD
Affymetrix Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_PDX1
GSE2109  870  54675  Expression Project for Oncology (expO)  
GSE7307  677  54675  Human body index - transcriptional profiling  
GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142
GSE1485  355  8793  Natural variation in human gene expression  15269782
GSE2350  336  12600  Normal and transformed human mature B cells  15778709
GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012
GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694
GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...  
GSE2034  286  22283  Breast cancer relapse free survival  15721472
COUNTS (SAGE or MPSS) Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_PDX1
GSE14  210  603158  CGAP SAGE  11257097
GSE1747  32  320452  Human 32 MPSS samples  
HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440
GSE10  4  96903  eye-SAGE  11756676
GSE41  4  36402  Effects of estrogen  11085516
GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073
GSE2056  3  29318  PBECs stimulated with pro-inflammatory cytokines and P....  15701729
GSE278  3  14807  Pancreas and islet gene expression  
GSE507  3  7700  Novel estrogen and tamoxifen induced genes  11850811
Dual Channel Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_PDX1
R0002  295  24469  Survival in breast cancer.  12490681
GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798
GSE3165A  188  28195  Identification of conserved gene expression features across...  
GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109
GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655
GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416
GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893
GSE2741  164  28195  Breast Tumor's study  16230372
GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...  
Other Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_PDX1
GSE2845  311  24479  Human breast tumor  
GSE2143  51  14443  Human coronary artery study  15942018
GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...  
GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164
GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692
GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594
GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...  
GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193
GSE2182  12  8155  Drug treatment comparison  
RNA sequences according to Unigene available on : June 11 2008
EMBL U30329.1; U30329. [EMBL / GenBank / DDBJ]
U35632.1; U35632. [EMBL / GenBank / DDBJ]
X99894.1; X99894. [EMBL / GenBank / DDBJ]