Nice View of CleanEx: HS_PCDH18

General information about the entry

Entry name  HS_PCDH18 Locus  4q31 Description of the gene  Protocadherin 18.

Cross-references

Entrez GeneID  54510 Genomic contig  AC_000047. Position of TSS : 135789283 on minus strand (based on ANNOTATION)  AC_000136. Position of TSS : 134183047 on minus strand (based on ANNOTATION)  NC_000004. Position of TSS : 138673078 on minus strand (based on ANNOTATION)  NT_016354. Position of TSS : 63001775 on minus strand (based on ANNOTATION)  NW_001838920. Position of TSS : 19029616 on minus strand (based on ANNOTATION)  NW_922217. Position of TSS : 18046762 on minus strand (based on ANNOTATION) Unigene  Hs.591691 MIM  608287 Genew  HGNC:14268; PCDH18 GeneCards  PCDH18 Ensembl  PCDH18 RefSeq  NM_019035  SWISSPROT  Q9HCL0(PCD18_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PCDH18 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE6919C  164  12646  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PCDH18 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PCDH18 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_PCDH18 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE2052  26  9943  IPF versus Control  16128620 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...

RNA sequences according to Unigene available on : June 11 2008

EMBL AB046782.1; AB046782. [EMBL / GenBank / DDBJ] AK292018.1; AK292018. [EMBL / GenBank / DDBJ] AK297122.1; AK297122. [EMBL / GenBank / DDBJ] AK298607.1; AK298607. [EMBL / GenBank / DDBJ] AL137471.1; AL137471. [EMBL / GenBank / DDBJ] BC093815.1; BC093815. [EMBL / GenBank / DDBJ]