Nice View of CleanEx: HS_OPN1MW

General information about the entry

Entry name  HS_OPN1MW Locus  Xq28 Description of the gene  Opsin 1 (cone pigments), medium-wave-sensitive. Old gene names  "color blindness, deutan", "green cone photoreceptor pigment"

Cross-references

Entrez GeneID  2652 Genomic contig  AC_000066. Position of TSS : 153643423 on plus strand (based on ANNOTATION)  NC_000023. Position of TSS : 153101360 on plus strand (based on ANNOTATION)  NT_011726. Position of TSS : 4268640 on plus strand (based on ANNOTATION)  NW_927732. Position of TSS : 1351070 on plus strand (based on ANNOTATION) Unigene  Hs.247787 MIM  303800 Genew  HGNC:4206; OPN1MW GeneCards  OPN1MW Ensembl  OPN1MW RefSeq  NM_000513  SWISSPROT  P04001(OPSG_HUMAN)  EPD  EP25086(HS_OPN1MW)

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_OPN1MW GSE89  40  7141  Bladder tumour stage classification  12469123 GSE88  31  7130  Bladder tumour recurrence prediction  12469123 GSE511  30  7129  Proliferating normal human peripheral blood mononuclear cells...  11839152 GSE995A  30  7129  Differentiation of acute myeloid leukemia cells  14770183 GSE764  26  7129  Comparison of Gene Expression in Uterine Smooth Muscle Tumors...   GSE985  21  7129  Gene Expression-Based High Throughput Screening: HL-60 Cells...  14770183 GSE703  20  7129  Blood pulmonary arterial hypertension  15215156 GSE1122  15  7129  Emphysema Lung Tissue Gene Expression Profiling  15284076 GSE121A  10  7129  Type 2 diabetes and insulin resistance  12436343

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_OPN1MW GSE14  210  603158  CGAP SAGE  11257097 HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE17  2  21113  Young and old muscle comparison  10904065

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_OPN1MW R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_OPN1MW GSE2845  311  24479  Human breast tumor   GSE2143  51  14443  Human coronary artery study  15942018 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193

RNA sequences according to Unigene available on : June 11 2008

EMBL BC140938.1; BC140938. [EMBL / GenBank / DDBJ]