Nice View of CleanEx: HS_NSUN5

General information about the entry

Entry name  HS_NSUN5 Locus  7q11.23 Description of the gene  NOL1/NOP2/Sun domain family, member 5. Old gene names  "Williams Beuren syndrome chromosome region 20A"

Cross-references

Entrez GeneID  55695 Genomic contig  AC_000050. Position of TSS : 68201112 on minus strand (based on ANNOTATION)  AC_000068. Position of TSS : 72055894 on minus strand (based on ANNOTATION)  AC_000139. Position of TSS : 68598968 on plus strand (based on ANNOTATION)  NC_000007. Position of TSS : 72360758 on minus strand (based on ANNOTATION)  NT_007758. Position of TSS : 10756166 on minus strand (based on ANNOTATION)  NT_079593. Position of TSS : 10751142 on minus strand (based on ANNOTATION)  NW_001839039. Position of TSS : 1449997 on plus strand (based on ANNOTATION)  NW_923450. Position of TSS : 8006 on minus strand (based on ANNOTATION) Unigene  Hs.647060 Genew  HGNC:16385; NSUN5 GeneCards  NSUN5 Ensembl  NSUN5 RefSeq  NM_018044   NM_148956  SWISSPROT  Q96P11(NSUN5_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_NSUN5 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321 GSE7390  198  22283  Strong Time Dependence of the 76-Gene Prognostic Signature  17545524

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_NSUN5 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_NSUN5 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_NSUN5 GSE2845  311  24479  Human breast tumor   GSE1440  140  9131  TIAR represses c-Myc biosynthesis following ultraviolet light...   GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE1433  12  9215  TIAR represses c-Myc biosynthesis following ultraviolet light...  16537914

RNA sequences according to Unigene available on : June 11 2008

EMBL AF412028.1; AF412028. [EMBL / GenBank / DDBJ] AF420249.1; AF420249. [EMBL / GenBank / DDBJ] AK001129.1; AK001129. [EMBL / GenBank / DDBJ] AK098619.1; AK098619. [EMBL / GenBank / DDBJ] AK126375.1; AK126375. [EMBL / GenBank / DDBJ] AK298221.1; AK298221. [EMBL / GenBank / DDBJ] BC008084.2; BC008084. [EMBL / GenBank / DDBJ]