Nice View of CleanEx: HS_MCF2L2

General information about the entry

Entry name  HS_MCF2L2 Locus  3q27.1 Description of the gene  MCF.2 cell line derived transforming sequence-like 2.

Cross-references

Entrez GeneID  23101 Genomic contig  AC_000046. Position of TSS : 181581484 on minus strand (based on ANNOTATION)  AC_000135. Position of TSS : 180301324 on plus strand (based on ANNOTATION)  NC_000003. Position of TSS : 184628548 on minus strand (based on ANNOTATION)  NT_005612. Position of TSS : 89641004 on minus strand (based on ANNOTATION)  NW_001838884. Position of TSS : 10877474 on plus strand (based on ANNOTATION)  NW_921807. Position of TSS : 89767154 on minus strand (based on ANNOTATION) Unigene  Hs.584868 Genew  HGNC:30319; MCF2L2 GeneCards  MCF2L2 Ensembl  MCF2L2 RefSeq  NM_015078  SWISSPROT  Q86YR7(MF2L2_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_MCF2L2 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321 GSE7390  198  22283  Strong Time Dependence of the 76-Gene Prognostic Signature  17545524

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_MCF2L2 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_MCF2L2 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_MCF2L2 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217

RNA sequences according to Unigene available on : June 11 2008

EMBL AB020668.1; AB020668. [EMBL / GenBank / DDBJ] AK124500.1; AK124500. [EMBL / GenBank / DDBJ] AK301698.1; AK301698. [EMBL / GenBank / DDBJ] AY172737.1; AY172737. [EMBL / GenBank / DDBJ] BC029074.2; BC029074. [EMBL / GenBank / DDBJ] BC064632.1; BC064632. [EMBL / GenBank / DDBJ] BX647790.1; BX647790. [EMBL / GenBank / DDBJ] BX648525.1; BX648525. [EMBL / GenBank / DDBJ] BX649003.1; BX649003. [EMBL / GenBank / DDBJ]