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Nice View of CleanEx : HS_LRRK2

Nice View of CleanEx: HS_LRRK2

This viewer shows only the top ten expression datasets of each type linked to HS_LRRK2

To see the full entry, go to HS_LRRK2 full view

[General] [RNA sequences] [Cross-references] [Affymetrix data] [COUNTS data] [Dual Channel data] [Other datasets]



 

General information about the entry
Entry name  HS_LRRK2
Locus  12q12
Description of the gene  Leucine-rich repeat kinase 2.
Old gene names  "Parkinson disease (autosomal dominant) 8"
Cross-references
Entrez GeneID  120892
Genomic contig  AC_000055. Position of TSS : 39422059 on plus strand (based on ANNOTATION)
 AC_000144. Position of TSS : 37646624 on plus strand (based on ANNOTATION)
 NC_000012. Position of TSS : 38905080 on plus strand (based on ANNOTATION)
 NT_029419. Position of TSS : 2762119 on plus strand (based on ANNOTATION)
 NW_001838057. Position of TSS : 78895 on plus strand (based on ANNOTATION)
 NW_925351. Position of TSS : 2967965 on plus strand (based on ANNOTATION)
Unigene  Hs.187636
MIM  609007
Genew  HGNC:18618; LRRK2
GeneCards  LRRK2
Ensembl  LRRK2
RefSeq
 NM_198578 
SWISSPROT
 Q5S007(LRRK2_HUMAN) 
EPD
Affymetrix Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_LRRK2
GSE2109  870  54675  Expression Project for Oncology (expO)  
GSE7307  677  54675  Human body index - transcriptional profiling  
GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012
GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...  
GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321
GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594
GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042
GSE3141  111  54675  Lung Cancer Dataset  16273092
GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB  
COUNTS (SAGE or MPSS) Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_LRRK2
GSE14  210  603158  CGAP SAGE  11257097
GSE1747  32  320452  Human 32 MPSS samples  
GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)  
HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440
GSE694  8  92782  SADE analysis of microdissected kidney  14595018
GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891
GSE10  4  96903  eye-SAGE  11756676
GSE41  4  36402  Effects of estrogen  11085516
GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073
Dual Channel Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_LRRK2
R0002  295  24469  Survival in breast cancer.  12490681
GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798
GSE3165A  188  28195  Identification of conserved gene expression features across...  
GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109
GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655
GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416
GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800
GSE2741  164  28195  Breast Tumor's study  16230372
GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...  
Other Expression Data References
Dataset's Name Number
of
Experiments
Number
of
Features
Dataset's Title PMID Features viewer
for
HS_LRRK2
GSE2845  311  24479  Human breast tumor  
GSE137  70  10368  Natural variation in human gene expression assessed in...  12567189
GSE2143  51  14443  Human coronary artery study  15942018
GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...  
GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164
GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692
GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594
GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...  
GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...  
RNA sequences according to Unigene available on : June 11 2008
EMBL AK026776.1; AK026776. [EMBL / GenBank / DDBJ]
AK122640.1; AK122640. [EMBL / GenBank / DDBJ]
AK127729.1; AK127729. [EMBL / GenBank / DDBJ]
AK131537.1; AK131537. [EMBL / GenBank / DDBJ]
AL832453.2; AL832453. [EMBL / GenBank / DDBJ]
AY792511.1; AY792511. [EMBL / GenBank / DDBJ]
BC117180.1; BC117180. [EMBL / GenBank / DDBJ]
BX640975.1; BX640975. [EMBL / GenBank / DDBJ]
EF212257.1; EF212257. [EMBL / GenBank / DDBJ]
Last update March 2014