Nice View of CleanEx: HS_HMHB1

General information about the entry

Entry name  HS_HMHB1 Locus  5q32 Description of the gene  Histocompatibility (minor) HB-1.

Cross-references

Entrez GeneID  57824 Genomic contig  AC_000048. Position of TSS : 139272942 on plus strand (based on ANNOTATION)  AC_000137. Position of TSS : 138347006 on minus strand (based on ANNOTATION)  NC_000005. Position of TSS : 143171918 on plus strand (based on ANNOTATION)  NT_029289. Position of TSS : 4354661 on plus strand (based on ANNOTATION)  NW_001838953. Position of TSS : 11943799 on minus strand (based on ANNOTATION)  NW_922784. Position of TSS : 16900958 on plus strand (based on ANNOTATION) Unigene  Hs.158320 MIM  609961 Genew  HGNC:29677; HMHB1 GeneCards  HMHB1 Ensembl  HMHB1 RefSeq  NM_021182  SWISSPROT  O97980(HMHB1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_HMHB1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_HMHB1 GSE14  210  603158  CGAP SAGE  11257097 HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_HMHB1 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_HMHB1 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE2052  26  9943  IPF versus Control  16128620 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193

RNA sequences according to Unigene available on : June 11 2008

EMBL AF103884.1; AF103884. [EMBL / GenBank / DDBJ] BC096711.1; BC096711. [EMBL / GenBank / DDBJ] BC098244.1; BC098244. [EMBL / GenBank / DDBJ] BC104412.1; BC104412. [EMBL / GenBank / DDBJ] BC104413.1; BC104413. [EMBL / GenBank / DDBJ] BC113894.1; BC113894. [EMBL / GenBank / DDBJ] BC113971.1; BC113971. [EMBL / GenBank / DDBJ]