Nice View of CleanEx: HS_FAM20C

General information about the entry

Entry name  HS_FAM20C Locus  7p22.3 Description of the gene  Family with sequence similarity 20, member C.

Cross-references

Entrez GeneID  56975 Genomic contig  AC_000050. Position of TSS : 211214 on plus strand (based on ANNOTATION)  AC_000068. Position of TSS : 303572 on plus strand (based on ANNOTATION)  AC_000139. Position of TSS : 203618 on plus strand (based on ANNOTATION)  AC_000139. Position of TSS : 203618 on plus strand (based on ANNOTATION)  NC_000007. Position of TSS : 288051 on plus strand (based on ANNOTATION)  NT_029998. Position of TSS : 254051 on plus strand (based on ANNOTATION)  NT_079592. Position of TSS : 253572 on plus strand (based on ANNOTATION)  NW_001838997. Position of TSS : 155847 on plus strand (based on ANNOTATION)  NW_001838998. Position of TSS : 5863 on plus strand (based on ANNOTATION)  NW_923206. Position of TSS : 153611 on plus strand (based on ANNOTATION) Unigene  Hs.134742 MIM  611061 Genew  HGNC:22140; FAM20C GeneCards  FAM20C Ensembl  FAM20C RefSeq  NM_020223  SWISSPROT  Q8IXL6(DMP4_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_FAM20C GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB   GSE1145B  90  54675  changes in cardiac transcription profiles brought about by...

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_FAM20C GSE14  210  603158  CGAP SAGE  11257097 GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_FAM20C R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_FAM20C GSE2845  311  24479  Human breast tumor   GSE2143  51  14443  Human coronary artery study  15942018 GSE2046  42  12426  Hep3B time-course   GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE1511  6  19282  Gene expression profile of CD56dimCD16+, CD56brightCD16- and...  15557145

RNA sequences according to Unigene available on : June 11 2008

EMBL AF533706.1; AF533706. [EMBL / GenBank / DDBJ] AK054704.1; AK054704. [EMBL / GenBank / DDBJ] BC040074.1; BC040074. [EMBL / GenBank / DDBJ] BC087853.1; BC087853. [EMBL / GenBank / DDBJ]