Nice View of CleanEx: HS_CSNK1G1

General information about the entry

Entry name  HS_CSNK1G1 Locus  15q22.1-q22.31 Description of the gene  Casein kinase 1, gamma 1.

Cross-references

Entrez GeneID  53944 Genomic contig  AC_000058. Position of TSS : 41526450 on minus strand (based on ANNOTATION)  AC_000147. Position of TSS : 41282388 on plus strand (based on ANNOTATION)  NC_000015. Position of TSS : 62435494 on minus strand (based on ANNOTATION)  NT_010194. Position of TSS : 35438759 on minus strand (based on ANNOTATION)  NW_001838218. Position of TSS : 9718481 on plus strand (based on ANNOTATION)  NW_925884. Position of TSS : 20624267 on minus strand (based on ANNOTATION) Unigene  Hs.646508 MIM  606274 Genew  HGNC:2454; CSNK1G1 GeneCards  CSNK1G1 Ensembl  CSNK1G1 RefSeq  NM_022048  SWISSPROT  Q9HCP0(KC1G1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CSNK1G1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CSNK1G1 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CSNK1G1 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CSNK1G1 GSE2845  311  24479  Human breast tumor   GSE1440  140  9131  TIAR represses c-Myc biosynthesis following ultraviolet light...   GSE2046  42  12426  Hep3B time-course   GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164 GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193

RNA sequences according to Unigene available on : June 11 2008

EMBL AB042563.1; AB042563. [EMBL / GenBank / DDBJ] AF223357.2; AF223357. [EMBL / GenBank / DDBJ] AK023779.1; AK023779. [EMBL / GenBank / DDBJ] AK025179.1; AK025179. [EMBL / GenBank / DDBJ] AK026957.1; AK026957. [EMBL / GenBank / DDBJ] AK126968.1; AK126968. [EMBL / GenBank / DDBJ] AK225960.1; AK225960. [EMBL / GenBank / DDBJ] AL137522.1; AL137522. [EMBL / GenBank / DDBJ] BC017236.2; BC017236. [EMBL / GenBank / DDBJ] BC062995.1; BC062995. [EMBL / GenBank / DDBJ] BC077731.1; BC077731. [EMBL / GenBank / DDBJ] BC130613.1; BC130613. [EMBL / GenBank / DDBJ]