Nice View of CleanEx: HS_CNTN4

General information about the entry

Entry name  HS_CNTN4 Locus  3p26-p25 Description of the gene  Contactin 4.

Cross-references

Entrez GeneID  152330 Genomic contig  AC_000046. Position of TSS : 2081783 on plus strand (based on ANNOTATION)  AC_000135. Position of TSS : 3033830 on minus strand (based on ANNOTATION)  NC_000003. Position of TSS : 2117246 on plus strand (based on ANNOTATION)  NT_022517. Position of TSS : 2082246 on plus strand (based on ANNOTATION)  NW_001838876. Position of TSS : 8266299 on minus strand (based on ANNOTATION)  NW_921651. Position of TSS : 2081783 on plus strand (based on ANNOTATION) Unigene  Hs.298705 MIM  607280 Genew  HGNC:2174; CNTN4 GeneCards  CNTN4 Ensembl  CNTN4 RefSeq  NM_175607   NM_175612   NM_175613  SWISSPROT  Q8IWV2(CNTN4_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CNTN4 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE6919C  164  12646  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CNTN4 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CNTN4 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE4268  125  44748  Breast and ovarian carcinoma  12960427

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CNTN4 GSE137  70  10368  Natural variation in human gene expression assessed in...  12567189 GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217 GSE1510  5  34030  Human UniGene Set RZPD 1 - Zipf's Normalization   GSE1133B  158  11391  tissue-specific pattern of mRNA expression  15075390

RNA sequences according to Unigene available on : June 11 2008

EMBL AF464063.1; AF464063. [EMBL / GenBank / DDBJ] AF549455.1; AF549455. [EMBL / GenBank / DDBJ] AK057278.1; AK057278. [EMBL / GenBank / DDBJ] AK095729.1; AK095729. [EMBL / GenBank / DDBJ] AK097633.1; AK097633. [EMBL / GenBank / DDBJ] AK125460.1; AK125460. [EMBL / GenBank / DDBJ] AY090737.1; AY090737. [EMBL / GenBank / DDBJ] BC013797.1; BC013797. [EMBL / GenBank / DDBJ] BC026119.1; BC026119. [EMBL / GenBank / DDBJ]