Nice View of CleanEx: HS_CLRN1

General information about the entry

Entry name  HS_CLRN1 Locus  3q25 Description of the gene  Clarin 1. Old gene names  "Usher syndrome 3A"

Cross-references

Entrez GeneID  7401 Genomic contig  AC_000046. Position of TSS : 149103662 on minus strand (based on ANNOTATION)  AC_000135. Position of TSS : 148017226 on plus strand (based on ANNOTATION)  NC_000003. Position of TSS : 152173475 on minus strand (based on ANNOTATION)  NT_005612. Position of TSS : 57185931 on minus strand (based on ANNOTATION)  NW_001838884. Position of TSS : 43364838 on plus strand (based on ANNOTATION)  NW_921807. Position of TSS : 57289332 on minus strand (based on ANNOTATION) Unigene  Hs.380222 MIM  606397 Genew  HGNC:12605; CLRN1 GeneCards  CLRN1 Ensembl  CLRN1 RefSeq  NM_052995   NM_174878  SWISSPROT  P58418(CLRN1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CLRN1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1145B  90  54675  changes in cardiac transcription profiles brought about by...   GSE6532C  87  54675  Definition of clinically distinct molecular subtypes in...  17401012 GSE9195  77  54675  Predicting prognosis using molecular profiling in estrogen...  18498629 GSE3744  47  54675  Human breast tumor expression  16473279 GSE2125  45  54675  isolated alveolar macrophages  16166618 GSE1643  40  54675  Normal Variance of Gene Expression in the Human Lung  16498083

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CLRN1 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CLRN1 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...   GSE2607  123  28195  Biological Classification of Breast Cancer by Real-Time...  16626501 GSE1378  60  21899  breast cancer / tamoxifen monotherapy (microdissected tumor...  15193263

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_CLRN1 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE1511  6  19282  Gene expression profile of CD56dimCD16+, CD56brightCD16- and...  15557145 GSE1133B  158  11391  tissue-specific pattern of mRNA expression  15075390

RNA sequences according to Unigene available on : June 11 2008

EMBL AF388366.1; AF388366. [EMBL / GenBank / DDBJ] AF482697.1; AF482697. [EMBL / GenBank / DDBJ] AF495717.1; AF495717. [EMBL / GenBank / DDBJ] BC074970.2; BC074970. [EMBL / GenBank / DDBJ] BC074971.2; BC074971. [EMBL / GenBank / DDBJ]