Nice View of CleanEx: HS_C9orf61

General information about the entry

Entry name  HS_C9orf61 Locus  9q13-q21 Description of the gene  Chromosome 9 open reading frame 61.

Cross-references

Entrez GeneID  9413 Genomic contig  AC_000052. Position of TSS : 42534770 on plus strand (based on ANNOTATION)  AC_000141. Position of TSS : 41783528 on plus strand (based on ANNOTATION)  NC_000009. Position of TSS : 71134060 on plus strand (based on ANNOTATION)  NT_023935. Position of TSS : 1108772 on plus strand (based on ANNOTATION)  NW_001839221. Position of TSS : 955065 on plus strand (based on ANNOTATION)  NW_924484. Position of TSS : 914806 on plus strand (based on ANNOTATION) Unigene  Hs.118003 MIM  607710 Genew  HGNC:24820; C9orf61 GeneCards  C9orf61 Ensembl  C9orf61 RefSeq  NM_001127608   NM_004816  SWISSPROT  Q15884(CI061_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf61 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472 GSE3494A  251  22283  An expression signature for p53 in breast cancer predicts...  16141321 GSE7390  198  22283  Strong Time Dependence of the 76-Gene Prognostic Signature  17545524

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf61 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf61 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf61 GSE2845  311  24479  Human breast tumor   GSE1440  140  9131  TIAR represses c-Myc biosynthesis following ultraviolet light...   GSE2143  51  14443  Human coronary artery study  15942018 GSE4716A  50  5352  Gene expression-based, individualized outcome prediction for...  15064725 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE465F  30  4507  Expression profiling in the muscular dystrophies  11121445

RNA sequences according to Unigene available on : June 11 2008

EMBL AK056152.1; AK056152. [EMBL / GenBank / DDBJ] AK126127.1; AK126127. [EMBL / GenBank / DDBJ] BC021685.1; BC021685. [EMBL / GenBank / DDBJ] BC113683.1; BC113683. [EMBL / GenBank / DDBJ] BC113685.1; BC113685. [EMBL / GenBank / DDBJ] L27479.1; L27479. [EMBL / GenBank / DDBJ]