Nice View of CleanEx: HS_C9orf130

General information about the entry

Entry name  HS_C9orf130 Locus  9q22.32 Description of the gene  Chromosome 9 open reading frame 130.

Cross-references

Entrez GeneID  100128782 Genomic contig  AC_000052. Position of TSS : 69079486 on minus strand (based on ANNOTATION)  AC_000141. Position of TSS : 68248418 on plus strand (based on ANNOTATION)  NC_000009. Position of TSS : 97678056 on minus strand (based on ANNOTATION)  NT_008470. Position of TSS : 5959440 on minus strand (based on ANNOTATION)  NW_001839235. Position of TSS : 1116893 on plus strand (based on ANNOTATION)  NW_924506. Position of TSS : 1449179 on minus strand (based on ANNOTATION) Unigene  Hs.494549 Genew  HGNC:27858; C9orf130 GeneCards  C9orf130 Ensembl  C9orf130 RefSeq SWISSPROT  Q8WZB0(CI130_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf130 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919B  167  12620  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf130 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf130 R0002  295  24469  Survival in breast cancer.  12490681 GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE4268  125  44748  Breast and ovarian carcinoma  12960427 GSE2193  123  47017  Normal_human_tissues  15774023 GSE4335  122  46999  Norway/Stanford Breast Tumors  12829800 GSE3901  120  45982  Response of quiescent human fibroblasts to different growth...   GSE425  119  43996  Acute myeloid leukemia study  15084693

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_C9orf130 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE137  70  10368  Natural variation in human gene expression assessed in...  12567189 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193

RNA sequences according to Unigene available on : June 11 2008

EMBL AK092145.1; AK092145. [EMBL / GenBank / DDBJ] AF170307.1; AF170307. [EMBL / GenBank / DDBJ] AK092137.1; AK092137. [EMBL / GenBank / DDBJ] AL389954.1; AL389954. [EMBL / GenBank / DDBJ]