Nice View of CleanEx: HS_BDNF

General information about the entry

Entry name  HS_BDNF Locus  11p13 Description of the gene  Brain-derived neurotrophic factor.

Cross-references

Entrez GeneID  627 Genomic contig  AC_000054. Position of TSS : 27889415 on minus strand (based on ANNOTATION)  AC_000143. Position of TSS : 27374586 on plus strand (based on ANNOTATION)  NC_000011. Position of TSS : 27699871 on minus strand (based on ANNOTATION)  NT_009237. Position of TSS : 26530536 on minus strand (based on ANNOTATION)  NW_001838022. Position of TSS : 23174577 on plus strand (based on ANNOTATION)  NW_925006. Position of TSS : 23389739 on minus strand (based on ANNOTATION) Unigene  Hs.502182 MIM  113505 Genew  HGNC:1033; BDNF GeneCards  BDNF Ensembl  BDNF RefSeq  NM_001709   NM_170731   NM_170732   NM_170733   NM_170734   NM_170735  SWISSPROT  P23560(BDNF_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_BDNF GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_BDNF GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_BDNF R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_BDNF GSE2845  311  24479  Human breast tumor   GSE137  70  10368  Natural variation in human gene expression assessed in...  12567189 GSE4716A  50  5352  Gene expression-based, individualized outcome prediction for...  15064725 GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164 GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE1767  31  19215  Human blood expression for Huntington's disease versus control,...  16043692 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE1748  22  858  VI-28 treatment induced alteration of gene expression in human...   GSE2097  22  17567  Epigenetic treatment of cervical carcinoma cell lines  16434596

RNA sequences according to Unigene available on : June 11 2008

EMBL AB038670.1; AB038670. [EMBL / GenBank / DDBJ] AB038671.1; AB038671. [EMBL / GenBank / DDBJ] AB038672.1; AB038672. [EMBL / GenBank / DDBJ] AB038673.1; AB038673. [EMBL / GenBank / DDBJ] AB038674.1; AB038674. [EMBL / GenBank / DDBJ] AF400438.1; AF400438. [EMBL / GenBank / DDBJ] AK289763.1; AK289763. [EMBL / GenBank / DDBJ] AK289853.1; AK289853. [EMBL / GenBank / DDBJ] AY054392.2; AY054392. [EMBL / GenBank / DDBJ] AY054393.2; AY054393. [EMBL / GenBank / DDBJ] AY054394.2; AY054394. [EMBL / GenBank / DDBJ] AY054395.2; AY054395. [EMBL / GenBank / DDBJ] AY054396.2; AY054396. [EMBL / GenBank / DDBJ] AY054397.2; AY054397. [EMBL / GenBank / DDBJ] AY054398.2; AY054398. [EMBL / GenBank / DDBJ] AY054399.2; AY054399. [EMBL / GenBank / DDBJ] AY054400.2; AY054400. [EMBL / GenBank / DDBJ] AY054406.3; AY054406. [EMBL / GenBank / DDBJ] AY442188.1; AY442188. [EMBL / GenBank / DDBJ] AY656701.1; AY656701. [EMBL / GenBank / DDBJ] BC029795.1; BC029795. [EMBL / GenBank / DDBJ] DQ250642.1; DQ250642. [EMBL / GenBank / DDBJ] EF674517.1; EF674517. [EMBL / GenBank / DDBJ] EF674518.1; EF674518. [EMBL / GenBank / DDBJ] EF674519.1; EF674519. [EMBL / GenBank / DDBJ] EF674520.1; EF674520. [EMBL / GenBank / DDBJ] EF674521.1; EF674521. [EMBL / GenBank / DDBJ] EF689009.1; EF689009. [EMBL / GenBank / DDBJ] EF689010.1; EF689010. [EMBL / GenBank / DDBJ] EF689011.1; EF689011. [EMBL / GenBank / DDBJ] EF689012.1; EF689012. [EMBL / GenBank / DDBJ] EF689013.1; EF689013. [EMBL / GenBank / DDBJ] EF689014.1; EF689014. [EMBL / GenBank / DDBJ] EF689015.1; EF689015. [EMBL / GenBank / DDBJ] EF689016.1; EF689016. [EMBL / GenBank / DDBJ] EF689017.1; EF689017. [EMBL / GenBank / DDBJ] EF689018.1; EF689018. [EMBL / GenBank / DDBJ] EF689019.1; EF689019. [EMBL / GenBank / DDBJ] EF689020.1; EF689020. [EMBL / GenBank / DDBJ] EF689021.1; EF689021. [EMBL / GenBank / DDBJ] M61176.1; M61176. [EMBL / GenBank / DDBJ] X60201.1; X60201. [EMBL / GenBank / DDBJ] X91251.1; X91251. [EMBL / GenBank / DDBJ]