Nice View of CleanEx: HS_B3GALNT2

General information about the entry

Entry name  HS_B3GALNT2 Locus  1q42.3 Description of the gene  Beta-1,3-N-acetylgalactosaminyltransferase 2. Old gene names  "UDP-GalNAc:betaGlcNAc beta-1,3-galactosaminyltransferase, polypeptide 2"

Cross-references

Entrez GeneID  148789 Genomic contig  AC_000044. Position of TSS : 208911040 on minus strand (based on ANNOTATION)  AC_000133. Position of TSS : 206119436 on minus strand (based on ANNOTATION)  NC_000001. Position of TSS : 233734403 on minus strand (based on ANNOTATION)  NT_004836. Position of TSS : 425569 on minus strand (based on ANNOTATION)  NW_001838549. Position of TSS : 5163006 on minus strand (based on ANNOTATION)  NW_927128. Position of TSS : 11492210 on minus strand (based on ANNOTATION) Unigene  Hs.716571 MIM  610194 Genew  HGNC:28596; B3GALNT2 GeneCards  B3GALNT2 Ensembl  B3GALNT2 RefSeq  NM_152490  SWISSPROT  Q8NCR0(B3GL2_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_B3GALNT2 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE6532B  327  22645  Definition of clinically distinct molecular subtypes in...  17401012 GSE4922B  289  22645  Genetic Reclassification of Histologic Grade Delineates New...   GSE3494B  251  22645  An expression signature for p53 in breast cancer predicts...  16141321 GSE6919C  164  12646  Expression Data from Normal and Prostate Tumor Tissues  17430594 GSE1456B  159  22645  Gene expression of breast cancer tissue in a large...  16280042 GSE3141  111  54675  Lung Cancer Dataset  16273092 GSE1427B  99  22645  Expression profiles in Blast Bank samples with AML/RAEB

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_B3GALNT2 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE10  4  96903  eye-SAGE  11756676 GSE41  4  36402  Effects of estrogen  11085516 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073 GSE953  4  53800  Effect of TERT and ATM on Gene Expression Profiles in Human...  14978791

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_B3GALNT2 R0002  295  24469  Survival in breast cancer.  12490681 GSE6128  191  28554  EGFR signaling varies with breast tumor subtype  17663798 GSE3165A  188  28195  Identification of conserved gene expression features across...   GSE1898  182  21533  Human Hepatocellular Carcinoma study  15565109 GSE1992  170  28554  A New Breast Tumor Intrinsic Gene List Identifies Novel...  16643655 GSE2740  169  44916  Estrogen-regulated genes predict survival in estrogen receptor...  16505416 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE2741  164  28195  Breast Tumor's study  16230372 GSE6130  141  28195  Agreement in Breast Cancer Classification between Microarray...

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_B3GALNT2 GSE2845  311  24479  Human breast tumor   GSE2143  51  14443  Human coronary artery study  15942018 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE3155B  20  34671  Gene expression profiling of the 20 human early breast...   GSE3155C  20  38993  Gene expression profiling of the 20 human early breast...   GSE2075  14  23879  Rosetta_miRNA_transfection_experiment  15685193 GSE2053  8  15075  RAvs.ND   GSE2243  8  41419  RIZ1 repression is associated with insulin-like growth factor-1...  16953217

RNA sequences according to Unigene available on : June 11 2008

EMBL AB209046.1; AB209046. [EMBL / GenBank / DDBJ] AK091497.1; AK091497. [EMBL / GenBank / DDBJ] AK130297.1; AK130297. [EMBL / GenBank / DDBJ] BC016974.1; BC016974. [EMBL / GenBank / DDBJ] BC029564.1; BC029564. [EMBL / GenBank / DDBJ]