Nice View of CleanEx: HS_AFAP1

General information about the entry

Entry name  HS_AFAP1 Locus  4p16 Description of the gene  Actin filament associated protein 1.

Cross-references

Entrez GeneID  60312 Genomic contig  AC_000047. Position of TSS : 7842024 on minus strand (based on ANNOTATION)  AC_000136. Position of TSS : 7786169 on minus strand (based on ANNOTATION)  NC_000004. Position of TSS : 7992552 on minus strand (based on ANNOTATION)  NT_006051. Position of TSS : 4029096 on minus strand (based on ANNOTATION)  NW_001838898. Position of TSS : 1723877 on minus strand (based on ANNOTATION)  NW_921918. Position of TSS : 7842024 on minus strand (based on ANNOTATION) Unigene  Hs.529369 MIM  608252 Genew  HGNC:24017; AFAP1 GeneCards  AFAP1 Ensembl  AFAP1 RefSeq  NM_001134647   NM_198595  SWISSPROT  Q8N556(AFAP1_HUMAN)  EPD

Affymetrix Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_AFAP1 GSE2109  870  54675  Expression Project for Oncology (expO)   GSE7307  677  54675  Human body index - transcriptional profiling   GSE5859A  507  8793  Allelic Differences Account for Gene Expression Differences...  17206142 GSE1485  355  8793  Natural variation in human gene expression  15269782 GSE2350  336  12600  Normal and transformed human mature B cells  15778709 GSE6532A  327  22283  Definition of clinically distinct molecular subtypes in...  17401012 GSE1159  293  22283  Expression profiles of acute myeloid leukemia patient samples...  15084694 GSE4922A  289  22283  Genetic Reclassification of Histologic Grade Delineates New...   GSE2034  286  22283  Breast cancer relapse free survival  15721472

COUNTS (SAGE or MPSS) Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_AFAP1 GSE14  210  603158  CGAP SAGE  11257097 GSE1747  32  320452  Human 32 MPSS samples   GSE1902  29  632194  Cancer Genome Anatomy Project (Human: longSAGE)   HSEST  17  18349  Tissue break-down of ESTs derived from Unigene clusters  8849440 GSE694  8  92782  SADE analysis of microdissected kidney  14595018 GSE31  5  23628  SAGE_HumanEpidermis  11772949 GSE545  5  38903  SAGE Hiroshima gastric cancer tissue  15059891 GSE10  4  96903  eye-SAGE  11756676 GSE514  4  55481  AIDS-related Kaposi's sarcoma  12697073

Dual Channel Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_AFAP1 R0002  295  24469  Survival in breast cancer.  12490681 GSE1726  167  14108  Rosetta_Merck_CEPH_Study  15514893 GSE4382  167  47015  Repeated observation of breast tumor subtypes in independent...  12829800 GSE4268  125  44748  Breast and ovarian carcinoma  12960427 GSE2193  123  47017  Normal_human_tissues  15774023 GSE4335  122  46999  Norway/Stanford Breast Tumors  12829800 GSE3901  120  45982  Response of quiescent human fibroblasts to different growth...   GSE425  119  43996  Acute myeloid leukemia study  15084693 GSE3933  112  45834  Prostate Cancer  14711987

Other Expression Data References

Dataset's Name Number of Experiments Number of Features Dataset's Title PMID Features viewer for HS_AFAP1 GSE2845  311  24479  Human breast tumor   GSE4056  190  2895  Expression profiling of human primary breast cancer tissue...  16622258 GSE4716A  50  5352  Gene expression-based, individualized outcome prediction for...  15064725 GSE3155A  40  24516  Gene expression profiling of the 20 human early breast...   GSE1434  32  11519  HaCaT +GLI1/2 24/72h  16434164 GSE1710  31  34030  Expression profiling in inflammatory bowel disease  16107186 GSE6752  31  18647  CodeLink Expression Data from primary prostate tumor and...  17430594 GSE2097  22  17567  Epigenetic treatment of cervical carcinoma cell lines  16434596 GSE1836  20  5351  Comparison of native versus cultured RPE cells  16234463

RNA sequences according to Unigene available on : June 11 2008

EMBL AB209676.1; AB209676. [EMBL / GenBank / DDBJ] AF188700.1; AF188700. [EMBL / GenBank / DDBJ] AK127962.1; AK127962. [EMBL / GenBank / DDBJ] AK290807.1; AK290807. [EMBL / GenBank / DDBJ] AK297631.1; AK297631. [EMBL / GenBank / DDBJ] BC015900.1; BC015900. [EMBL / GenBank / DDBJ] BC032777.1; BC032777. [EMBL / GenBank / DDBJ] D25248.1; D25248. [EMBL / GenBank / DDBJ]